PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504622.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 673aa    MW: 75233.1 Da    PI: 5.9379
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07121143427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C ff++ G+C  GdrC F+Hgp
  XP_004504622.1 121 VPCIFFQK-GFCLKGDRCAFSHGP 143
                     59******.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.6062453IPR000571Zinc finger, CCCH-type
PfamPF156635.8E-122579No hitNo description
SMARTSM003560.0022552IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.3575581IPR000571Zinc finger, CCCH-type
SMARTSM003560.25780IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507117144IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5118143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5118142IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4121143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4122143IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MVAQQPQLQI QTQQPTPSPQ DEALKRNTDC VYFLASPLTC KKGNECEYRH SEYARVNPRD  60
CWYWLNGNCL NPKCSFRHPP LDGLLGTPPA ASASGPSVPS TQLATTSATH AAPYNSSKPA  120
VPCIFFQKGF CLKGDRCAFS HGPNSNNGNK IASQGSMINQ GAENPSFKKP FGGIEKHTQE  180
KKTFQGNVAT FGGAEAKPVK KFETAPQKNI FKLEKHVPPP TAGFGNEALR FKTASSPPPA  240
NGPNVARANR VLQARLPDDH SFHSGKDSDE FLRESSPGFD VLVADELRNS DYYHGEDEFG  300
KPRGQDERGL DSLNEFDIGH SADYSSAADI DRERFRVSQG YESYDHVQEP YGWEPRKASA  360
HAERRTHHRS DSPDSVEVSD LRHRLSKRRK GNGLKSVVTN DYALERHGEE RSHRFPRKDS  420
VHLPSNERSV NNRFRGRITL PPNGGDGNLE RDLDRGRIRG RLSSGRLQAP HEGRIQDRLR  480
GRLPDDERRS FRGRSIGDRS GFSGPKSLAE LKFGRNTENR EQQSFGKRKS FRDPQQSDDD  540
VPFEGPKPLS EILKEKKGVG AGAASSQSSK SVYNKNEGIT ENEAVLETKE EESKIQDNTD  600
VTHGQSSEDG MIYDEAAEDQ EYEGNDQREE GDYEYEQGDE EYDYEQVDEG ENQEYMEDED  660
GDDFAKKIGV VLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504622.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A0B2QWC50.0A0A0B2QWC5_GLYSO; Zinc finger CCCH domain-containing protein 17
TrEMBLI1K3A10.0I1K3A1_SOYBN; Uncharacterized protein
STRINGGLYMA05G26620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137