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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004504622.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 673aa MW: 75233.1 Da PI: 5.9379 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.2 | 1.2e-07 | 121 | 143 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C GdrC F+Hgp XP_004504622.1 121 VPCIFFQK-GFCLKGDRCAFSHGP 143 59******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.606 | 24 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 5.8E-12 | 25 | 79 | No hit | No description |
SMART | SM00356 | 0.002 | 25 | 52 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.357 | 55 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.2 | 57 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.507 | 117 | 144 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 118 | 143 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 118 | 142 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-4 | 121 | 143 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 122 | 143 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MVAQQPQLQI QTQQPTPSPQ DEALKRNTDC VYFLASPLTC KKGNECEYRH SEYARVNPRD 60 CWYWLNGNCL NPKCSFRHPP LDGLLGTPPA ASASGPSVPS TQLATTSATH AAPYNSSKPA 120 VPCIFFQKGF CLKGDRCAFS HGPNSNNGNK IASQGSMINQ GAENPSFKKP FGGIEKHTQE 180 KKTFQGNVAT FGGAEAKPVK KFETAPQKNI FKLEKHVPPP TAGFGNEALR FKTASSPPPA 240 NGPNVARANR VLQARLPDDH SFHSGKDSDE FLRESSPGFD VLVADELRNS DYYHGEDEFG 300 KPRGQDERGL DSLNEFDIGH SADYSSAADI DRERFRVSQG YESYDHVQEP YGWEPRKASA 360 HAERRTHHRS DSPDSVEVSD LRHRLSKRRK GNGLKSVVTN DYALERHGEE RSHRFPRKDS 420 VHLPSNERSV NNRFRGRITL PPNGGDGNLE RDLDRGRIRG RLSSGRLQAP HEGRIQDRLR 480 GRLPDDERRS FRGRSIGDRS GFSGPKSLAE LKFGRNTENR EQQSFGKRKS FRDPQQSDDD 540 VPFEGPKPLS EILKEKKGVG AGAASSQSSK SVYNKNEGIT ENEAVLETKE EESKIQDNTD 600 VTHGQSSEDG MIYDEAAEDQ EYEGNDQREE GDYEYEQGDE EYDYEQVDEG ENQEYMEDED 660 GDDFAKKIGV VLS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504622.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | A0A0B2QWC5 | 0.0 | A0A0B2QWC5_GLYSO; Zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | I1K3A1 | 0.0 | I1K3A1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G26620.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9227 | 31 | 37 |